stacks (2.54+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * debhelper-compat 13 (routine-update)
  * Lintian warned: d/NEWS.Debian -> d/NEWS

 -- Steffen Moeller <moeller@debian.org>  Tue, 15 Sep 2020 03:16:02 +0200

stacks (2.53+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Updated bio.tools entry to lower-case
  * Added dependency on littler to allow execution
    of R script

 -- Steffen Moeller <moeller@debian.org>  Sun, 26 Apr 2020 01:41:49 +0200

stacks (2.52+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 12 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field. (routine-update)
  * Removed additional autogenerated files from upstream

 -- Steffen Moeller <moeller@debian.org>  Thu, 26 Mar 2020 02:25:20 +0100

stacks (2.41+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper 12
  * Standards-Version: 4.4.0
  * Secure URI in copyright format
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * dh_auto_install --no-parallel
  * Removed stacks-web package since the code for the web service
    was removed from upstream source and the package has no active
    users according to popcon anyway
  * Python3 port of two simple scripts using 2to3

 -- Andreas Tille <tille@debian.org>  Fri, 12 Jul 2019 20:40:33 +0200

stacks (2.2+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Fix path for Perl interpreter

 -- Andreas Tille <tille@debian.org>  Thu, 13 Sep 2018 09:51:56 +0200

stacks (2.0Beta9+dfsg-1) unstable; urgency=medium

  * New upstream Beta release

 -- Andreas Tille <tille@debian.org>  Mon, 19 Mar 2018 12:10:23 +0100

stacks (2.0Beta8c+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Remove code copy of htslib and use Debian packaged version of htslib
    instead
  * Standards-Version: 4.1.3
  * debhelper 11

 -- Andreas Tille <tille@debian.org>  Sun, 18 Feb 2018 17:15:06 +0100

stacks (1.46-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.0.0 (no changes needed)
  * do not disable PIE
    Closes: #865668
  * d/rules: use DEB_SOURCE

 -- Andreas Tille <tille@debian.org>  Sat, 24 Jun 2017 08:20:24 +0200

stacks (1.44-2) unstable; urgency=medium

  * d/watch: version=4
  * debhelper 10
  * stacks-web: Depends s/ | mysql-server/ | virtual-mysql-server/
    Closes: #848464

 -- Andreas Tille <tille@debian.org>  Sat, 17 Dec 2016 17:34:44 +0100

stacks (1.44-1) unstable; urgency=medium

  [ Kevin Murray ]
  * Fix script executable paths to reflect debian install directory

  [ Andreas Tille ]
  * New upstream version
  * stacks-web Depends: default-mysql-server | mysql-server

 -- Andreas Tille <tille@debian.org>  Sat, 22 Oct 2016 21:04:24 +0200

stacks (1.42-1) unstable; urgency=medium

  * New upstream version
  * hardening -pie

 -- Andreas Tille <tille@debian.org>  Sat, 13 Aug 2016 10:49:42 +0200

stacks (1.40-1) unstable; urgency=medium

  * New upstream version
  * cme fix dpkg-control
  * Build-Depends: samtools to ensure that package builds only on those
    architectures where samtools is available

 -- Andreas Tille <tille@debian.org>  Thu, 19 May 2016 12:55:47 +0200

stacks (1.38-1) unstable; urgency=medium

  * New upstream version
  * debian/control: s/php5/php/
    Closes: #821664
  * Better hardening

 -- Andreas Tille <tille@debian.org>  Tue, 19 Apr 2016 10:45:21 +0200

stacks (1.37-1) unstable; urgency=medium

  * New upstream version
  * Moved from SVN to Git
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Thu, 10 Mar 2016 23:31:22 +0100

stacks (1.35-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Tue, 22 Sep 2015 21:05:58 +0200

stacks (1.34-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Mon, 27 Jul 2015 17:58:43 +0200

stacks (1.32-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Mon, 13 Jul 2015 19:52:06 +0200

stacks (1.25-1) unstable; urgency=medium

  * Initial upload to Debian
    Closes: #778832

 -- Andreas Tille <tille@debian.org>  Thu, 19 Feb 2015 18:31:48 +0100

stacks (1.25-0biolinux2) trusty; urgency=medium

  * Correct silly cut-and-paste-o in control file

 -- Tim Booth <tbooth@ceh.ac.uk>  Thu, 19 Feb 2015 16:52:53 +0000

stacks (1.25-0biolinux1) trusty; urgency=medium

  * New upstream
  * Re-work stacks-setup-database to make databases named by project
  * ...and to enable database deletion
  * Improve the help you get from "stacks help"

 -- Tim Booth <tbooth@ceh.ac.uk>  Wed, 18 Feb 2015 11:34:22 +0000

stacks (1.24-0ubuntu4) trusty; urgency=medium

  * Change web path back to /stacks rather than stacks-web,
    just leaving the Apache config fragment with that name.

 -- Tim Booth <tbooth@ceh.ac.uk>  Thu, 29 Jan 2015 11:06:58 +0000

stacks (1.24-0ubuntu3) trusty; urgency=low

  * Set PATH before calling any Stacks program in the wrapper

 -- Tim Booth <tbooth@ceh.ac.uk>  Fri, 23 Jan 2015 14:10:55 +0000

stacks (1.24-0ubuntu2) trusty; urgency=medium

  * Initial release.
  * Make stacks package plus stack-web for the web stuff
  * Require sparsehash >2

 -- Tim Booth <tbooth@ceh.ac.uk>  Thu, 15 Jan 2015 18:50:45 +0000
